Panpipes Tutorials

This website contains tutorials to exemplify running Panpipes.

For installation please check the documentation

List of tutorials

• Ingesting data with panpipes
• Ingesting multiome datasets from cellranger arc outputs
• Ingesting multimodal (CITE-Seq + VDJ) datasets from cellranger outputs
• Ingesting mouse scRNA-Seq data with Panpipes
• Filtering data with panpipes
• Integrating data with panpipes
• Clustering tutorial
• Visualizing data with Panpipes
• Reference mapping
• Ingesting 10X Visium data with Panpipes
• Ingesting MERFISH data with Panpipes
• Preprocessing spatial data with Panpipes
• Deconvoluting spatial data with Panpipes