Panpipes Tutorials
This website contains tutorials to exemplify running Panpipes.
For installation please check the documentation
List of tutorials
- Ingesting data with panpipes
- Ingesting multiome datasets from cellranger arc outputs
- Ingesting multimodal (CITE-Seq + VDJ) datasets from cellranger outputs
- Ingesting mouse scRNA-Seq data with Panpipes
- Filtering data with panpipes
- Integrating data with panpipes
- Clustering tutorial
- Visualizing data with Panpipes
- Reference mapping
- Ingesting 10X Visium data with Panpipes
- Ingesting MERFISH data with Panpipes
- Preprocessing spatial data with Panpipes
- Deconvoluting spatial data with Panpipes